PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00528.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 332aa    MW: 37045.3 Da    PI: 8.5668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00528.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Rsa1.0_00528.1_g00014.1 14 KGPWTPEEDIVLVTYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                             79******************************99************97 PP

2Myb_DNA-binding48.52e-1567112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T+ E++ +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Rsa1.0_00528.1_g00014.1  67 RGNFTENEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                              89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.683961IPR017930Myb domain
SuperFamilySSF466893.15E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002493.2E-151461IPR001005SANT/Myb domain
CDDcd001672.50E-101661No hitNo description
PROSITE profilePS5129423.80162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2465117IPR009057Homeodomain-like
SMARTSM007173.0E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1467112IPR001005SANT/Myb domain
CDDcd001679.15E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVRPPCCDKG GVKKGPWTPE EDIVLVTYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TENEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKTN  120
QDFHQQPDQS RDNSSLSSSP SSSSANSNSN IARGQWERRL QTDIHLAKKA LSEALSPDVS  180
PIITLATTTA ATSSSTESRR SIPSARDVLR AQETCTTYAS RTENIAKLLK GWVKNSPKTQ  240
NSPDRRVSPD SMTKEVIKSD VEKDCAGPFQ SFSGFDHLKD CVSAGVSPNH ETKPDITGCS  300
NQSQWSLFEN WLFEDSGGQI GDILLDESSN FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-251411627128MYB TRANSFORMING PROTEIN
1h89_C6e-251411658159MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-251411658159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667350.0KC966735.1 Brassica napus MYB transcription factor 30 (MYB30.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616367.10.0PREDICTED: myb-related protein 306-like
SwissprotQ9SCU71e-180MYB30_ARATH; Transcription factor MYB30
TrEMBLA0A0D3AWG20.0A0A0D3AWG2_BRAOL; Uncharacterized protein
STRINGBra025361.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58422348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-160myb domain protein 30